/EXTERNAL DEEP/K006093_K006094_K006095_3_lane_gembs/51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423259.51

BACK

SAMPLE K006093_K006094_K006095_3_lane_gembs LANE 51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423259.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 397106612 100.00 % 198553306 100.00 % 198553306 100.00 %
General Reads 381544994 96.08 % 191883760 96.64 % 189661234 95.52 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3409658 0.86 % 1723085 0.87 % 1686573 0.85 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 12151960 3.06 % 4946461 2.49 % 7205499 3.63 %
Bisulfite_reads C2T 197498880 49.73 % 99301301 50.01 % 98197579 49.46 %
Bisulfite_reads G2A 187455772 47.21 % 94305544 47.50 % 93150228 46.91 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 117354978
Average Unique 59.11 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14510317972 36.18 % 5515983722 27.51 % 8994334250 44.85 %
Base Counts Overall C 5432001802 13.54 % 701558329 3.50 % 4730443473 23.59 %
Base Counts Overall G 5766515060 14.38 % 4894500970 24.41 % 872014090 4.35 %
Base Counts Overall T 13994741627 34.89 % 8742448186 43.59 % 5252293441 26.19 %
Base Counts Overall N 404191351 1.01 % 199392699 0.99 % 204798652 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9767809835946448
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 138659285



Mapping Quality

Mapping Quality Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423259.51.mapq.png



Read Length

Read Length Reads
100 198553306
100 198553306



Insert Size Plot

Insert Size Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423259.51.isize.png