/EXTERNAL DEEP/K006093_K006094_K006095_3_lane_gembs/51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423260.51

BACK

SAMPLE K006093_K006094_K006095_3_lane_gembs LANE 51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423260.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 375615836 100.00 % 187807918 100.00 % 187807918 100.00 %
General Reads 371733912 98.97 % 186600231 99.36 % 185133681 98.58 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 17 0.00 % 10 0.00 % 7 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3881907 1.03 % 1207677 0.64 % 2674230 1.42 %
Bisulfite_reads C2T 194630902 51.82 % 97670193 52.01 % 96960709 51.63 %
Bisulfite_reads G2A 177103027 47.15 % 88930048 47.35 % 88172979 46.95 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 139912313
Average Unique 74.50 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14134688753 37.26 % 6139640602 32.37 % 7995048151 42.15 %
Base Counts Overall C 4700343901 12.39 % 220921695 1.16 % 4479422206 23.61 %
Base Counts Overall G 4706300730 12.41 % 4507379990 23.76 % 198920740 1.05 %
Base Counts Overall T 14012539945 36.94 % 7910750213 41.70 % 6101789732 32.17 %
Base Counts Overall N 383326107 1.01 % 189907218 1.00 % 193418889 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 174550509



Mapping Quality

Mapping Quality Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423260.51.mapq.png



Read Length

Read Length Reads
100 187807918
100 187807918



Insert Size Plot

Insert Size Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423260.51.isize.png