/EXTERNAL DEEP/mapping_coverage/K006093_K006094_K006095_3_lane_gembs
BACK
SAMPLE K006093_K006094_K006095_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1107913826 |
100% |
104047011306 |
100% |
| Mapped |
1095802883 |
98.91 % |
102835917006 |
98.84 % |
| Passed |
763038583 |
68.87 % |
69559487006 |
66.85 % |
| NotPassed |
332764300 |
30.04 % |
33276430000 |
31.98 % |
| |
|
|
|
|
| LowMAPQ |
270333044 |
24.40 % |
27033304400 |
25.98 % |
| MateUnmapped |
12110943 |
1.09 % |
1211094300 |
1.16 % |
| Duplicate |
17858409 |
1.61 % |
1785840900 |
1.72 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
94140 |
0.01 % |
9414000 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
44478707 |
4.01 % |
4447870700 |
4.27 % |
| Unmapped |
12110943 |
1.09 % |
1211094300 |
1.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
76287696600 |
100% |
| Passed |
64841759195 |
85.00 % |
| Trimmed |
3471991325 |
4.55 % |
| Clipped |
239132756 |
0.31 % |
| Overlapping |
6489076838 |
8.51 % |
| LowQuality |
1245736486 |
1.63 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |