/EXTERNAL DEEP/methylation/K006093_K006094_K006095_3_lane_gembs
BACK
SAMPLE K006093_K006094_K006095_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26317518 |
20231286 |
76.87 % |
| NonRefCpG |
243891 |
103259 |
42.34 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5081889 |
9.93 % |
2841200 |
6.50 % |
91057 |
20.79 % |
21999 |
8.25 % |
| Intermediate (0.3-0.7) |
7923606 |
15.49 % |
5931237 |
13.56 % |
96889 |
22.12 % |
46890 |
17.58 % |
| Methylated (0.7-1) |
38160687 |
74.58 % |
34960630 |
79.94 % |
249994 |
57.08 % |
197883 |
74.18 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.860 |
|
0.880 |
|
0.760 |
|
0.860 |
|