{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 97449394, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 94942494, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.43, 
            "paired": 97449394, 
            "paired_qc_failed": 0, 
            "read1": 48724697, 
            "read1_qc_failed": 0, 
            "read2": 48724697, 
            "read2_qc_failed": 0, 
            "paired_properly": 93395179, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.84, 
            "with_itself": 94459092, 
            "with_itself_qc_failed": 0, 
            "singletons": 483402, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.5, 
            "diff_chroms": 162326, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 340975906, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 331955873, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.35, 
            "paired": 340975906, 
            "paired_qc_failed": 0, 
            "read1": 170487953, 
            "read1_qc_failed": 0, 
            "read2": 170487953, 
            "read2_qc_failed": 0, 
            "paired_properly": 317967837, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 93.25, 
            "with_itself": 329465448, 
            "with_itself_qc_failed": 0, 
            "singletons": 2490425, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.73, 
            "diff_chroms": 4791736, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 39892826, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 12370474, 
            "paired_opt_dupes": 11800, 
            "dupes_pct": 0.310093
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 131944073, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 6909853, 
            "paired_opt_dupes": 32973, 
            "dupes_pct": 0.05237
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 39879129, 
            "distinct_read_pairs": 27512989, 
            "one_read_pair": 18781928, 
            "two_read_pair": 6088730, 
            "NRF": 0.689909, 
            "PBC1": 0.682657, 
            "PBC2": 3.084704
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 131852916, 
            "distinct_read_pairs": 124951324, 
            "one_read_pair": 118429996, 
            "two_read_pair": 6176361, 
            "NRF": 0.947657, 
            "PBC1": 0.947809, 
            "PBC2": 19.174721
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 55044704, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 55044704, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 55044704, 
            "paired_qc_failed": 0, 
            "read1": 27522352, 
            "read1_qc_failed": 0, 
            "read2": 27522352, 
            "read2_qc_failed": 0, 
            "paired_properly": 55044704, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 55044704, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 250068440, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 250068440, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 250068440, 
            "paired_qc_failed": 0, 
            "read1": 125034220, 
            "read1_qc_failed": 0, 
            "read2": 125034220, 
            "read2_qc_failed": 0, 
            "paired_properly": 250068440, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 250068440, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 33632, 
        "Np": 0, 
        "N_opt": 33632, 
        "N_consv": 33632, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 155, 
            "corr_est_frag_len": 0.180547720635816, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1808536, 
            "argmin_corr": 1500, 
            "min_corr": 0.145596, 
            "NSC": 1.24006, 
            "RSC": 0.991324
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.238978632965
        }, 
        "rep1-pr1": {
            "FRiP": 0.254470233879
        }, 
        "rep1-pr2": {
            "FRiP": 0.254249811035
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.219808778319
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.248664034081, 
            "auc": 0.493270129726, 
            "ch_div": 0.124304819783, 
            "elbow_pt": 5.21516544522e-189, 
            "jsd": 0.651958099274, 
            "syn_auc": 0.50078975345, 
            "syn_elbow_pt": 0.28539034422, 
            "syn_jsd": 0.35181943139
        }
    ]
}
