/EXTERNAL DEEP/K006096_K006097_K006098_K006099_4_lane_gembs/51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423141.51

BACK

SAMPLE K006096_K006097_K006098_K006099_4_lane_gembs LANE 51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423141.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 400235586 100.00 % 200117793 100.00 % 200117793 100.00 %
General Reads 388568608 97.08 % 195451382 97.67 % 193117226 96.50 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 637076 0.16 % 322162 0.16 % 314914 0.16 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11029902 2.76 % 4344249 2.17 % 6685653 3.34 %
Bisulfite_reads C2T 199785606 49.92 % 100464237 50.20 % 99321369 49.63 %
Bisulfite_reads G2A 189420078 47.33 % 95309307 47.63 % 94110771 47.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 126425697
Average Unique 63.18 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14737236633 36.46 % 5761088058 28.50 % 8976148575 44.41 %
Base Counts Overall C 5399750740 13.36 % 635903750 3.15 % 4763846990 23.57 %
Base Counts Overall G 5758523822 14.25 % 4980467319 24.64 % 778056503 3.85 %
Base Counts Overall T 14124503208 34.94 % 8632459322 42.71 % 5492043886 27.17 %
Base Counts Overall N 403779783 1.00 % 201978644 1.00 % 201801139 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9804162523015905
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 148148337



Mapping Quality

Mapping Quality Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423141.51.mapq.png



Read Length

Read Length Reads
100 200117793
100 200117793



Insert Size Plot

Insert Size Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423141.51.isize.png