/EXTERNAL DEEP/K006096_K006097_K006098_K006099_4_lane_gembs/51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423150.51

BACK

SAMPLE K006096_K006097_K006098_K006099_4_lane_gembs LANE 51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423150.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 329794570 100.00 % 164897285 100.00 % 164897285 100.00 %
General Reads 254623042 77.21 % 125978517 76.40 % 128644525 78.01 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 314662 0.10 % 158068 0.10 % 156594 0.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 74856866 22.70 % 38760700 23.51 % 36096166 21.89 %
Bisulfite_reads C2T 132920562 40.30 % 65940225 39.99 % 66980337 40.62 %
Bisulfite_reads G2A 122017142 37.00 % 60196360 36.51 % 61820782 37.49 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 95447309
Average Unique 57.88 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12318115202 36.98 % 5334324868 32.03 % 6983790334 41.93 %
Base Counts Overall C 4672401589 14.03 % 966414716 5.80 % 3705986873 22.25 %
Base Counts Overall G 4909501123 14.74 % 3819393431 22.93 % 1090107692 6.55 %
Base Counts Overall T 11076226768 33.25 % 6369183020 38.24 % 4707043748 28.26 %
Base Counts Overall N 333006888 1.00 % 165309750 0.99 % 167697138 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9944101400083418
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 117428305



Mapping Quality

Mapping Quality Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423150.51.mapq.png



Read Length

Read Length Reads
100 164897285
100 164897285



Insert Size Plot

Insert Size Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423150.51.isize.png