/EXTERNAL DEEP/K006096_K006097_K006098_K006099_4_lane_gembs/51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423151.51

BACK

SAMPLE K006096_K006097_K006098_K006099_4_lane_gembs LANE 51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423151.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 440218320 100.00 % 220109160 100.00 % 220109160 100.00 %
General Reads 427753895 97.17 % 215108785 97.73 % 212645110 96.61 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 700050 0.16 % 354099 0.16 % 345951 0.16 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11764375 2.67 % 4646276 2.11 % 7118099 3.23 %
Bisulfite_reads C2T 219971339 49.97 % 110586622 50.24 % 109384717 49.70 %
Bisulfite_reads G2A 208482606 47.36 % 104876262 47.65 % 103606344 47.07 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 138855069
Average Unique 63.08 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 16200065991 36.44 % 6330650521 28.48 % 9869415470 44.39 %
Base Counts Overall C 5945371035 13.37 % 704679050 3.17 % 5240691985 23.57 %
Base Counts Overall G 6351448425 14.29 % 5482338937 24.66 % 869109488 3.91 %
Base Counts Overall T 15521917063 34.91 % 9493111423 42.70 % 6028805640 27.12 %
Base Counts Overall N 443247806 1.00 % 220245229 0.99 % 223002577 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.980536183791904
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 162804909



Mapping Quality

Mapping Quality Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423151.51.mapq.png



Read Length

Read Length Reads
100 220109160
100 220109160



Insert Size Plot

Insert Size Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423151.51.isize.png