/EXTERNAL DEEP/K006096_K006097_K006098_K006099_4_lane_gembs/51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423158.51

BACK

SAMPLE K006096_K006097_K006098_K006099_4_lane_gembs LANE 51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423158.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 288456776 100.00 % 144228388 100.00 % 144228388 100.00 %
General Reads 219693512 76.16 % 108880824 75.49 % 110812688 76.83 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 274792 0.10 % 138253 0.10 % 136539 0.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 68488472 23.74 % 35209311 24.41 % 33279161 23.07 %
Bisulfite_reads C2T 114734327 39.78 % 56980073 39.51 % 57754254 40.04 %
Bisulfite_reads G2A 105233977 36.48 % 52039004 36.08 % 53194973 36.88 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 82360752
Average Unique 57.10 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 10741735268 36.87 % 4660488670 31.99 % 6081246598 41.75 %
Base Counts Overall C 4124080985 14.16 % 887239195 6.09 % 3236841790 22.22 %
Base Counts Overall G 4290522731 14.73 % 3317955986 22.78 % 972566745 6.68 %
Base Counts Overall T 9681919397 33.23 % 5551196102 38.11 % 4130723295 28.36 %
Base Counts Overall N 295875995 1.02 % 150187235 1.03 % 145688760 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.993086619887388
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 101333155



Mapping Quality

Mapping Quality Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423158.51.mapq.png



Read Length

Read Length Reads
100 144228388
100 144228388



Insert Size Plot

Insert Size Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423158.51.isize.png