/EXTERNAL DEEP/methylation/K006096_K006097_K006098_K006099_4_lane_gembs
BACK
SAMPLE K006096_K006097_K006098_K006099_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26034285 |
18693152 |
71.80 % |
| NonRefCpG |
251301 |
72687 |
28.92 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6681831 |
13.25 % |
4464805 |
10.67 % |
136814 |
30.38 % |
36677 |
15.66 % |
| Intermediate (0.3-0.7) |
11748815 |
23.30 % |
8608260 |
20.57 % |
126513 |
28.09 % |
61849 |
26.40 % |
| Methylated (0.7-1) |
31989340 |
63.45 % |
28772258 |
68.76 % |
187052 |
41.53 % |
135758 |
57.95 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.800 |
|
0.830 |
|
0.600 |
|
0.760 |
|