/EXTERNAL DEEP/K006100_K006101_K006102_K006103_4_lane_gembs/51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423199.51
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 330240476 | 100.00 % | 165120238 | 100.00 % | 165120238 | 100.00 % |
| General Reads | 246273970 | 74.57 % | 121133730 | 73.36 % | 125140240 | 75.79 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 480753 | 0.15 % | 241073 | 0.15 % | 239680 | 0.15 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 83485753 | 25.28 % | 43745435 | 26.49 % | 39740318 | 24.07 % |
| Bisulfite_reads C2T | 128038000 | 38.77 % | 63111147 | 38.22 % | 64926853 | 39.32 % |
| Bisulfite_reads G2A | 118716723 | 35.95 % | 58263656 | 35.29 % | 60453067 | 36.61 % |
| Concept | Value |
|---|---|
| Unique Fragments | 94476989 |
| Average Unique | 57.22 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 12405984374 | 37.19 % | 5338056270 | 32.01 % | 7067928104 | 42.38 % |
| Base Counts Overall C | 4601685259 | 13.80 % | 1027679877 | 6.16 % | 3574005382 | 21.43 % |
| Base Counts Overall G | 4859690296 | 14.57 % | 3708858096 | 22.24 % | 1150832200 | 6.90 % |
| Base Counts Overall T | 11153384244 | 33.44 % | 6436550065 | 38.60 % | 4716834179 | 28.28 % |
| Base Counts Overall N | 333543903 | 1.00 % | 165999730 | 1.00 % | 167544173 | 1.00 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9928431150934498 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 113896886 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 100 | 165120238 |
| 100 | 165120238 |
| Insert Size Histogram |
|---|
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