/EXTERNAL DEEP/K006100_K006101_K006102_K006103_4_lane_gembs/51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423217.51

BACK

SAMPLE K006100_K006101_K006102_K006103_4_lane_gembs LANE 51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423217.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 395074824 100.00 % 197537412 100.00 % 197537412 100.00 %
General Reads 380844169 96.40 % 191361813 96.87 % 189482356 95.92 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1096667 0.28 % 554169 0.28 % 542498 0.27 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 13133988 3.32 % 5621430 2.85 % 7512558 3.80 %
Bisulfite_reads C2T 196265639 49.68 % 98589426 49.91 % 97676213 49.45 %
Bisulfite_reads G2A 185675197 47.00 % 93326556 47.25 % 92348641 46.75 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 123388977
Average Unique 62.46 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14545929170 36.45 % 5696914663 28.55 % 8849014507 44.35 %
Base Counts Overall C 5318544879 13.33 % 649774010 3.26 % 4668770869 23.40 %
Base Counts Overall G 5704486922 14.30 % 4890211057 24.51 % 814275865 4.08 %
Base Counts Overall T 13936691984 34.93 % 8516734903 42.69 % 5419957081 27.17 %
Base Counts Overall N 396904269 0.99 % 197643979 0.99 % 199260290 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9800526183577906
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 144869197



Mapping Quality

Mapping Quality Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423217.51.mapq.png



Read Length

Read Length Reads
100 197537412
100 197537412



Insert Size Plot

Insert Size Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423217.51.isize.png