/EXTERNAL DEEP/K006100_K006101_K006102_K006103_4_lane_gembs/51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423222.51

BACK

SAMPLE K006100_K006101_K006102_K006103_4_lane_gembs LANE 51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423222.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 430630138 100.00 % 215315069 100.00 % 215315069 100.00 %
General Reads 415240574 96.43 % 208703223 96.93 % 206537351 95.92 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1191380 0.28 % 601645 0.28 % 589735 0.27 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14198184 3.30 % 6010201 2.79 % 8187983 3.80 %
Bisulfite_reads C2T 213989804 49.69 % 107526082 49.94 % 106463722 49.45 %
Bisulfite_reads G2A 202442150 47.01 % 101778786 47.27 % 100663364 46.75 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 135503935
Average Unique 62.93 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15904927950 36.57 % 6239244151 28.69 % 9665683799 44.45 %
Base Counts Overall C 5747850511 13.22 % 689189244 3.17 % 5058661267 23.26 %
Base Counts Overall G 6156554842 14.16 % 5295672780 24.35 % 860882062 3.96 %
Base Counts Overall T 15243042337 35.05 % 9305586783 42.79 % 5937455554 27.30 %
Base Counts Overall N 441268298 1.01 % 217129011 1.00 % 224139287 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.980218753887504
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 158894433



Mapping Quality

Mapping Quality Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423222.51.mapq.png



Read Length

Read Length Reads
100 215315069
100 215315069



Insert Size Plot

Insert Size Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423222.51.isize.png