/EXTERNAL DEEP/K006100_K006101_K006102_K006103_4_lane_gembs/51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423223.51

BACK

SAMPLE K006100_K006101_K006102_K006103_4_lane_gembs LANE 51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423223.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 271339404 100.00 % 135669702 100.00 % 135669702 100.00 %
General Reads 202690753 74.70 % 100076057 73.76 % 102614696 75.64 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 397662 0.15 % 199309 0.15 % 198353 0.15 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 68250989 25.15 % 35394336 26.09 % 32856653 24.22 %
Bisulfite_reads C2T 105459392 38.87 % 52141385 38.43 % 53318007 39.30 %
Bisulfite_reads G2A 97629023 35.98 % 48133981 35.48 % 49495042 36.48 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 78169649
Average Unique 57.62 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 10129893233 36.96 % 4362249467 31.84 % 5767643766 42.09 %
Base Counts Overall C 3820681576 13.94 % 842544227 6.15 % 2978137349 21.73 %
Base Counts Overall G 3960585948 14.45 % 3049394216 22.25 % 911191732 6.65 %
Base Counts Overall T 9218054151 33.64 % 5310723561 38.76 % 3907330590 28.52 %
Base Counts Overall N 276064896 1.01 % 137728431 1.01 % 138336465 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9925569856978615
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 94191663



Mapping Quality

Mapping Quality Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423223.51.mapq.png



Read Length

Read Length Reads
100 135669702
100 135669702



Insert Size Plot

Insert Size Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423223.51.isize.png