/EXTERNAL DEEP/mapping_coverage/K006100_K006101_K006102_K006103_4_lane_gembs
BACK
SAMPLE K006100_K006101_K006102_K006103_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1156492551 |
100% |
107696684817 |
100% |
| Mapped |
1131076649 |
97.80 % |
105155094617 |
97.64 % |
| Passed |
689658261 |
59.63 % |
61013255817 |
56.65 % |
| NotPassed |
441418388 |
38.17 % |
44141838800 |
40.99 % |
| |
|
|
|
|
| LowMAPQ |
312795146 |
27.05 % |
31279514600 |
29.04 % |
| MateUnmapped |
25415902 |
2.20 % |
2541590200 |
2.36 % |
| Duplicate |
89778184 |
7.76 % |
8977818400 |
8.34 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
58020 |
0.01 % |
5802000 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
38787038 |
3.35 % |
3878703800 |
3.60 % |
| Unmapped |
25415902 |
2.20 % |
2541590200 |
2.36 % |
Base Level Counts
| Bases |
# |
% |
| Total |
68936401700 |
100% |
| Passed |
57110795923 |
82.85 % |
| Trimmed |
3081131744 |
4.47 % |
| Clipped |
324727745 |
0.47 % |
| Overlapping |
7598418138 |
11.02 % |
| LowQuality |
821328150 |
1.19 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |