/EXTERNAL DEEP/methylation/K006100_K006101_K006102_K006103_4_lane_gembs
BACK
SAMPLE K006100_K006101_K006102_K006103_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26186798 |
17787573 |
67.93 % |
| NonRefCpG |
248767 |
67346 |
27.07 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7608149 |
15.01 % |
4755711 |
11.64 % |
139228 |
31.23 % |
38785 |
17.09 % |
| Intermediate (0.3-0.7) |
13478956 |
26.60 % |
9636549 |
23.59 % |
132781 |
29.78 % |
65161 |
28.72 % |
| Methylated (0.7-1) |
29593067 |
58.39 % |
26461502 |
64.77 % |
173826 |
38.99 % |
122962 |
54.19 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.760 |
|
0.800 |
|
0.570 |
|
0.730 |
|