/EXTERNAL DEEP/K006104_K006105_K006106_3_lane_gembs/51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423276.51

BACK

SAMPLE K006104_K006105_K006106_3_lane_gembs LANE 51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423276.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 429641416 100.00 % 214820708 100.00 % 214820708 100.00 %
General Reads 416466615 96.93 % 209323806 97.44 % 207142809 96.43 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1283826 0.30 % 648272 0.30 % 635554 0.30 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11890975 2.77 % 4848630 2.26 % 7042345 3.28 %
Bisulfite_reads C2T 214633521 49.96 % 107850073 50.20 % 106783448 49.71 %
Bisulfite_reads G2A 203116920 47.28 % 102122005 47.54 % 100994915 47.01 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 139551186
Average Unique 64.96 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15839674794 36.50 % 6236826000 28.75 % 9602848794 44.26 %
Base Counts Overall C 5769848440 13.30 % 705294929 3.25 % 5064553511 23.34 %
Base Counts Overall G 6133144727 14.13 % 5285545018 24.36 % 847599709 3.91 %
Base Counts Overall T 15215238788 35.06 % 9253926209 42.65 % 5961312579 27.48 %
Base Counts Overall N 435876267 1.00 % 215299352 0.99 % 220576915 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9802032513503345
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 163380150



Mapping Quality

Mapping Quality Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423276.51.mapq.png



Read Length

Read Length Reads
100 214820708
100 214820708



Insert Size Plot

Insert Size Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423276.51.isize.png