/EXTERNAL DEEP/K006104_K006105_K006106_3_lane_gembs/51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423284.51

BACK

SAMPLE K006104_K006105_K006106_3_lane_gembs LANE 51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423284.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 372569306 100.00 % 186284653 100.00 % 186284653 100.00 %
General Reads 317549275 85.23 % 158081899 84.86 % 159467376 85.60 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 808106 0.22 % 405326 0.22 % 402780 0.22 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 54211925 14.55 % 27797428 14.92 % 26414497 14.18 %
Bisulfite_reads C2T 164880867 44.26 % 82151810 44.10 % 82729057 44.41 %
Bisulfite_reads G2A 153476514 41.19 % 76335415 40.98 % 77141099 41.41 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 125373498
Average Unique 67.30 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14101418757 37.47 % 5878271793 31.24 % 8223146964 43.71 %
Base Counts Overall C 4969060924 13.21 % 789585853 4.20 % 4179475071 22.21 %
Base Counts Overall G 5007678396 13.31 % 4233074209 22.50 % 774604187 4.12 %
Base Counts Overall T 13168084088 34.99 % 7727301782 41.07 % 5440782306 28.92 %
Base Counts Overall N 383257741 1.02 % 186516316 0.99 % 196741425 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9947420290687897
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 150357767



Mapping Quality

Mapping Quality Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423284.51.mapq.png



Read Length

Read Length Reads
100 186284653
100 186284653



Insert Size Plot

Insert Size Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423284.51.isize.png