/EXTERNAL DEEP/K006104_K006105_K006106_3_lane_gembs/51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423291.51

BACK

SAMPLE K006104_K006105_K006106_3_lane_gembs LANE 51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423291.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 360984936 100.00 % 180492468 100.00 % 180492468 100.00 %
General Reads 312239648 86.50 % 155572077 86.19 % 156667571 86.80 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 789550 0.22 % 396003 0.22 % 393547 0.22 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 47955738 13.28 % 24524388 13.59 % 23431350 12.98 %
Bisulfite_reads C2T 162105396 44.91 % 80821820 44.78 % 81283576 45.03 %
Bisulfite_reads G2A 150923802 41.81 % 75146260 41.63 % 75777542 41.98 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 123779811
Average Unique 68.58 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 13684120111 37.53 % 5678783243 31.15 % 8005336868 43.91 %
Base Counts Overall C 4732953404 12.98 % 718907399 3.94 % 4014046005 22.02 %
Base Counts Overall G 4819833135 13.22 % 4101691483 22.50 % 718141652 3.94 %
Base Counts Overall T 12855502815 35.26 % 7548444996 41.41 % 5307057819 29.11 %
Base Counts Overall N 367069071 1.01 % 181912147 1.00 % 185156924 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9945916996852201
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 148244835



Mapping Quality

Mapping Quality Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423291.51.mapq.png



Read Length

Read Length Reads
100 180492468
100 180492468



Insert Size Plot

Insert Size Histogram
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423291.51.isize.png