/EXTERNAL DEEP/K006104_K006105_K006106_3_lane_gembs

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SAMPLE K006104_K006105_K006106_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1163195658 100.00 % 581597829 100.00 % 581597829 100.00 %
General Reads 1046255538 89.95 % 522977782 89.92 % 523277756 89.97 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2881482 0.25 % 1449601 0.25 % 1431881 0.25 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 114058638 9.81 % 57170446 9.83 % 56888192 9.78 %
Bisulfite_reads C2T 541619784 46.56 % 270823703 46.57 % 270796081 46.56 %
Bisulfite_reads G2A 507517236 43.63 % 253603680 43.60 % 253913556 43.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 388704495
Average Unique 66.83 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43625213662 37.13 % 17793881036 30.29 % 25831332626 43.97 %
Base Counts Overall C 15471862768 13.17 % 2213788181 3.77 % 13258074587 22.57 %
Base Counts Overall G 15960656258 13.59 % 13620310710 23.19 % 2340345548 3.98 %
Base Counts Overall T 41238825691 35.10 % 24529672987 41.76 % 16709152704 28.45 %
Base Counts Overall N 1186203079 1.01 % 583727815 0.99 % 602475264 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9888441382808227
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 461982752



Mapping Quality

Mapping Quality Histogram
K006104_K006105_K006106_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006104_K006105_K006106_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423291.51
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423284.51
51_Hf04.Bisulfite-Seq.DNA_methylation.EGAX00001423276.51