/EXTERNAL DEEP/mapping_coverage/K006104_K006105_K006106_3_lane_gembs
BACK
SAMPLE K006104_K006105_K006106_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1014654231 |
100% |
95986272488 |
100% |
| Mapped |
997559758 |
98.32 % |
94276825188 |
98.22 % |
| Passed |
716756378 |
70.64 % |
66196487188 |
68.96 % |
| NotPassed |
280803380 |
27.67 % |
28080338000 |
29.25 % |
| |
|
|
|
|
| LowMAPQ |
219725728 |
21.66 % |
21972572800 |
22.89 % |
| MateUnmapped |
17094473 |
1.68 % |
1709447300 |
1.78 % |
| Duplicate |
31905427 |
3.14 % |
3190542700 |
3.32 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
31602 |
0.00 % |
3160200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
29140623 |
2.87 % |
2914062300 |
3.04 % |
| Unmapped |
17094473 |
1.68 % |
1709447300 |
1.78 % |
Base Level Counts
| Bases |
# |
% |
| Total |
71656104800 |
100% |
| Passed |
61971048669 |
86.48 % |
| Trimmed |
3305485137 |
4.61 % |
| Clipped |
236198928 |
0.33 % |
| Overlapping |
5223418684 |
7.29 % |
| LowQuality |
919953382 |
1.28 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |