/EXTERNAL DEEP/methylation/K006104_K006105_K006106_3_lane_gembs
BACK
SAMPLE K006104_K006105_K006106_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26133054 |
20329309 |
77.79 % |
| NonRefCpG |
217039 |
77834 |
35.86 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5143916 |
10.10 % |
3105564 |
7.05 % |
91224 |
23.52 % |
22967 |
10.33 % |
| Intermediate (0.3-0.7) |
7898637 |
15.50 % |
6089575 |
13.82 % |
91314 |
23.54 % |
43643 |
19.64 % |
| Methylated (0.7-1) |
37908499 |
74.40 % |
34856896 |
79.13 % |
205325 |
52.94 % |
155630 |
70.03 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.860 |
|
0.880 |
|
0.730 |
|
0.840 |
|