/EXTERNAL DEEP/K006107_K006108_2_lane_gembs

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SAMPLE K006107_K006108_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 695717010 100.00 % 347858505 100.00 % 347858505 100.00 %
General Reads 620651969 89.21 % 313684117 90.18 % 306967852 88.25 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1683139 0.24 % 852037 0.24 % 831102 0.24 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 73381902 10.55 % 33322351 9.58 % 40059551 11.52 %
Bisulfite_reads C2T 319034482 45.86 % 161219755 46.35 % 157814727 45.37 %
Bisulfite_reads G2A 303300626 43.60 % 153316399 44.07 % 149984227 43.12 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 220696826
Average Unique 63.44 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 26124902509 37.18 % 10654012123 30.32 % 15470890386 44.03 %
Base Counts Overall C 9274214666 13.20 % 1310825454 3.73 % 7963389212 22.67 %
Base Counts Overall G 9272624108 13.20 % 7846420721 22.33 % 1426203387 4.06 %
Base Counts Overall T 24877985400 35.40 % 14969670246 42.61 % 9908315154 28.20 %
Base Counts Overall N 717691327 1.02 % 352780461 1.00 % 364910866 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9807253013607684
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 256138307



Mapping Quality

Mapping Quality Histogram
K006107_K006108_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006107_K006108_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
51_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001423330.51
51_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001423331.51