/EXTERNAL DEEP/methylation/K006107_K006108_2_lane_gembs
BACK
SAMPLE K006107_K006108_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
24628897 |
8051974 |
32.69 % |
| NonRefCpG |
295379 |
24629 |
8.34 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
9105317 |
19.63 % |
2985720 |
12.51 % |
209281 |
40.55 % |
35693 |
24.72 % |
| Intermediate (0.3-0.7) |
14847115 |
32.02 % |
6295470 |
26.37 % |
163142 |
31.61 % |
45834 |
31.75 % |
| Methylated (0.7-1) |
22422502 |
48.35 % |
14589050 |
61.12 % |
143656 |
27.84 % |
62846 |
43.53 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.680 |
|
0.780 |
|
0.420 |
|
0.630 |
|