/EXTERNAL DEEP/K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs/51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423309.51

BACK

SAMPLE K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs LANE 51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423309.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 298417884 100.00 % 149208942 100.00 % 149208942 100.00 %
General Reads 281416244 94.30 % 145426491 97.46 % 135989753 91.14 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1021083 0.34 % 524299 0.35 % 496784 0.33 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 15980557 5.36 % 3258152 2.18 % 12722405 8.53 %
Bisulfite_reads C2T 145122960 48.63 % 74930897 50.22 % 70192063 47.04 %
Bisulfite_reads G2A 137314367 46.01 % 71019893 47.60 % 66294474 44.43 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 110744312
Average Unique 74.22 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 11324246847 37.57 % 4899504247 32.51 % 6424742600 42.63 %
Base Counts Overall C 3173528307 10.53 % 157301309 1.04 % 3016226998 20.01 %
Base Counts Overall G 3278049553 10.88 % 3141578477 20.85 % 136471076 0.91 %
Base Counts Overall T 11312317964 37.53 % 6713205826 44.55 % 4599112138 30.52 %
Base Counts Overall N 1052063613 3.49 % 158513283 1.05 % 893550330 5.93 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9952356669454764
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 130533219



Mapping Quality

Mapping Quality Histogram
51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423309.51.mapq.png



Read Length

Read Length Reads
100 149208942
100 149208942



Insert Size Plot

Insert Size Histogram
51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423309.51.isize.png