/EXTERNAL DEEP/K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs/51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423310.51

BACK

SAMPLE K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs LANE 51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423310.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 135774146 100.00 % 67887073 100.00 % 67887073 100.00 %
General Reads 102523950 75.51 % 50385104 74.22 % 52138846 76.80 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 305761 0.23 % 153734 0.23 % 152027 0.22 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 32944435 24.26 % 17348235 25.55 % 15596200 22.97 %
Bisulfite_reads C2T 52799754 38.89 % 26243817 38.66 % 26555937 39.12 %
Bisulfite_reads G2A 50029957 36.85 % 24295021 35.79 % 25734936 37.91 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 35913983
Average Unique 52.90 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 5272269834 38.45 % 2342759898 34.17 % 2929509936 42.73 %
Base Counts Overall C 1741809308 12.70 % 484308297 7.06 % 1257501011 18.34 %
Base Counts Overall G 1869694915 13.63 % 1342332280 19.58 % 527362635 7.69 %
Base Counts Overall T 4422339269 32.25 % 2619074600 38.20 % 1803264669 26.30 %
Base Counts Overall N 407075420 2.97 % 68119298 0.99 % 338956122 4.94 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9955409694184001
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 43264684



Mapping Quality

Mapping Quality Histogram
51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423310.51.mapq.png



Read Length

Read Length Reads
100 67887073
100 67887073



Insert Size Plot

Insert Size Histogram
51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423310.51.isize.png