/EXTERNAL DEEP/K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs/51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423311.51

BACK

SAMPLE K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs LANE 51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423311.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 378916718 100.00 % 189458359 100.00 % 189458359 100.00 %
General Reads 355810931 93.90 % 182276752 96.21 % 173534179 91.59 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2313589 0.61 % 1178867 0.62 % 1134722 0.60 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 20792198 5.49 % 6002740 3.17 % 14789458 7.81 %
Bisulfite_reads C2T 184263787 48.63 % 94317949 49.78 % 89945838 47.48 %
Bisulfite_reads G2A 173860733 45.88 % 89137670 47.05 % 84723063 44.72 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 109623048
Average Unique 57.86 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 13347012627 34.88 % 5421440101 28.33 % 7925572526 41.42 %
Base Counts Overall C 5231650890 13.67 % 895633679 4.68 % 4336017211 22.66 %
Base Counts Overall G 5698664713 14.89 % 4678042987 24.45 % 1020621726 5.33 %
Base Counts Overall T 12904050950 33.72 % 7950319312 41.55 % 4953731638 25.89 %
Base Counts Overall N 1089209338 2.85 % 189858180 0.99 % 899351158 4.70 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9761494408948097
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 131324339



Mapping Quality

Mapping Quality Histogram
51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423311.51.mapq.png



Read Length

Read Length Reads
100 189458359
100 189458359



Insert Size Plot

Insert Size Histogram
51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423311.51.isize.png