/EXTERNAL DEEP/K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs/51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423312.51

BACK

SAMPLE K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs LANE 51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423312.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 136708074 100.00 % 68354037 100.00 % 68354037 100.00 %
General Reads 103718291 75.87 % 51026272 74.65 % 52692019 77.09 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 300740 0.22 % 151096 0.22 % 149644 0.22 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 32689043 23.91 % 17176669 25.13 % 15512374 22.69 %
Bisulfite_reads C2T 53384344 39.05 % 26540496 38.83 % 26843848 39.27 %
Bisulfite_reads G2A 50634687 37.04 % 24636872 36.04 % 25997815 38.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 36548904
Average Unique 53.47 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 5330672364 38.61 % 2359463954 34.18 % 2971208410 43.04 %
Base Counts Overall C 1737761684 12.59 % 480897312 6.97 % 1256864372 18.21 %
Base Counts Overall G 1862366898 13.49 % 1336217731 19.35 % 526149167 7.62 %
Base Counts Overall T 4477117166 32.43 % 2658555525 38.51 % 1818561641 26.34 %
Base Counts Overall N 399597362 2.89 % 68623215 0.99 % 330974147 4.79 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9955459606533223
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 43787930



Mapping Quality

Mapping Quality Histogram
51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423312.51.mapq.png



Read Length

Read Length Reads
100 68354037
100 68354037



Insert Size Plot

Insert Size Histogram
51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423312.51.isize.png