/EXTERNAL DEEP/K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs/51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423315.51

BACK

SAMPLE K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs LANE 51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423315.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 289333704 100.00 % 144666852 100.00 % 144666852 100.00 %
General Reads 268638729 92.85 % 141170474 97.58 % 127468255 88.11 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 977301 0.34 % 508860 0.35 % 468441 0.32 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 19717674 6.81 % 2987518 2.07 % 16730156 11.56 %
Bisulfite_reads C2T 138508204 47.87 % 72698833 50.25 % 65809371 45.49 %
Bisulfite_reads G2A 131107826 45.31 % 68980501 47.68 % 62127325 42.95 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 104221010
Average Unique 72.04 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 10773918326 36.87 % 4750846318 32.51 % 6023072008 41.22 %
Base Counts Overall C 3005555635 10.29 % 153475862 1.05 % 2852079773 19.52 %
Base Counts Overall G 3179500543 10.88 % 3054655866 20.91 % 124844677 0.85 %
Base Counts Overall T 10811824653 37.00 % 6500732549 44.49 % 4311092104 29.51 %
Base Counts Overall N 1451904947 4.97 % 151641457 1.04 % 1300263490 8.90 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.99538880232955
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 122609296



Mapping Quality

Mapping Quality Histogram
51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423315.51.mapq.png



Read Length

Read Length Reads
100 144666852
100 144666852



Insert Size Plot

Insert Size Histogram
51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423315.51.isize.png