/EXTERNAL DEEP/K006115_K006116_K006117_K006118_4_lane_gembs/43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422762.43

BACK

SAMPLE K006115_K006116_K006117_K006118_4_lane_gembs LANE 43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422762.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 414147764 100.00 % 207073882 100.00 % 207073882 100.00 %
General Reads 401708085 97.00 % 201931389 97.52 % 199776696 96.48 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4521324 1.09 % 2277018 1.10 % 2244306 1.08 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7918355 1.91 % 2865475 1.38 % 5052880 2.44 %
Bisulfite_reads C2T 209324157 50.54 % 105205208 50.81 % 104118949 50.28 %
Bisulfite_reads G2A 196905252 47.54 % 99003199 47.81 % 97902053 47.28 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 145224678
Average Unique 70.13 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15515384489 37.09 % 5986318771 28.62 % 9529065718 45.56 %
Base Counts Overall C 5286901397 12.64 % 494477766 2.36 % 4792423631 22.91 %
Base Counts Overall G 5585455622 13.35 % 4983633870 23.83 % 601821752 2.88 %
Base Counts Overall T 14959766493 35.76 % 9242538728 44.19 % 5717227765 27.34 %
Base Counts Overall N 481416163 1.15 % 207492947 0.99 % 273923216 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9818263175456213
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 169274011



Mapping Quality

Mapping Quality Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422762.43.mapq.png



Read Length

Read Length Reads
100 207073882
100 207073882



Insert Size Plot

Insert Size Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422762.43.isize.png