/EXTERNAL DEEP/K006115_K006116_K006117_K006118_4_lane_gembs/43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422766.43

BACK

SAMPLE K006115_K006116_K006117_K006118_4_lane_gembs LANE 43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422766.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 373228196 100.00 % 186614098 100.00 % 186614098 100.00 %
General Reads 367440772 98.45 % 184471671 98.85 % 182969101 98.05 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1827194 0.49 % 918235 0.49 % 908959 0.49 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3960230 1.06 % 1224192 0.66 % 2736038 1.47 %
Bisulfite_reads C2T 189705660 50.83 % 95231027 51.03 % 94474633 50.63 %
Bisulfite_reads G2A 179562306 48.11 % 90158879 48.31 % 89403427 47.91 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 155075807
Average Unique 83.10 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14886190806 39.49 % 6011936678 31.90 % 8874254128 47.08 %
Base Counts Overall C 3814476507 10.12 % 195222563 1.04 % 3619253944 19.20 %
Base Counts Overall G 3863390478 10.25 % 3675748336 19.50 % 187642142 1.00 %
Base Counts Overall T 14730365230 39.08 % 8777818020 46.57 % 5952547210 31.58 %
Base Counts Overall N 401624775 1.07 % 187298301 0.99 % 214326474 1.14 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9827498528737914
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 177622980



Mapping Quality

Mapping Quality Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422766.43.mapq.png



Read Length

Read Length Reads
100 186614098
100 186614098



Insert Size Plot

Insert Size Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422766.43.isize.png