/EXTERNAL DEEP/K006115_K006116_K006117_K006118_4_lane_gembs/43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422769.43

BACK

SAMPLE K006115_K006116_K006117_K006118_4_lane_gembs LANE 43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422769.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 363215350 100.00 % 181607675 100.00 % 181607675 100.00 %
General Reads 358031693 98.57 % 179585367 98.89 % 178446326 98.26 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1794512 0.49 % 900872 0.50 % 893640 0.49 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3389145 0.93 % 1121436 0.62 % 2267709 1.25 %
Bisulfite_reads C2T 184913570 50.91 % 92740657 51.07 % 92172913 50.75 %
Bisulfite_reads G2A 174912635 48.16 % 87745582 48.32 % 87167053 48.00 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 151604434
Average Unique 83.48 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14449374977 39.39 % 5838530785 31.83 % 8610844192 46.95 %
Base Counts Overall C 3737516628 10.19 % 192287405 1.05 % 3545229223 19.33 %
Base Counts Overall G 3778273527 10.30 % 3593609373 19.59 % 184664154 1.01 %
Base Counts Overall T 14355696375 39.13 % 8535886314 46.54 % 5819810061 31.73 %
Base Counts Overall N 363888843 0.99 % 182061298 0.99 % 181827545 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9826301869421188
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 173629347



Mapping Quality

Mapping Quality Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422769.43.mapq.png



Read Length

Read Length Reads
100 181607675
100 181607675



Insert Size Plot

Insert Size Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422769.43.isize.png