/EXTERNAL DEEP/mapping_coverage/K006115_K006116_K006117_K006118_4_lane_gembs
BACK
SAMPLE K006115_K006116_K006117_K006118_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1450970523 |
100% |
136155533144 |
100% |
| Mapped |
1438469487 |
99.14 % |
134905429544 |
99.08 % |
| Passed |
1118450106 |
77.08 % |
102903491444 |
75.58 % |
| NotPassed |
320019381 |
22.06 % |
32001938100 |
23.50 % |
| |
|
|
|
|
| LowMAPQ |
234158814 |
16.14 % |
23415881400 |
17.20 % |
| MateUnmapped |
12501036 |
0.86 % |
1250103600 |
0.92 % |
| Duplicate |
48247418 |
3.33 % |
4824741800 |
3.54 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
22838 |
0.00 % |
2283800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
37590311 |
2.59 % |
3759031100 |
2.76 % |
| Unmapped |
12501036 |
0.86 % |
1250103600 |
0.92 % |
Base Level Counts
| Bases |
# |
% |
| Total |
111821206400 |
100% |
| Passed |
95855823818 |
85.72 % |
| Trimmed |
5119903122 |
4.58 % |
| Clipped |
220010676 |
0.20 % |
| Overlapping |
8697704280 |
7.78 % |
| LowQuality |
1927764504 |
1.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |