/EXTERNAL DEEP/methylation/K006115_K006116_K006117_K006118_4_lane_gembs
BACK
SAMPLE K006115_K006116_K006117_K006118_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26794361 |
22487303 |
83.93 % |
| NonRefCpG |
284067 |
195440 |
68.80 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5388373 |
10.25 % |
2963373 |
6.32 % |
51612 |
9.81 % |
16293 |
3.94 % |
| Intermediate (0.3-0.7) |
7182890 |
13.66 % |
5659931 |
12.08 % |
86370 |
16.42 % |
50409 |
12.19 % |
| Methylated (0.7-1) |
40003197 |
76.09 % |
38241589 |
81.60 % |
388168 |
73.77 % |
346726 |
83.87 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.890 |
|
0.860 |
|
0.890 |
|