/EXTERNAL DEEP/mapping_coverage/K006119_K006120_K006121_3_lane_gembs
BACK
SAMPLE K006119_K006120_K006121_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1050926549 |
100% |
98409710135 |
100% |
| Mapped |
1041754986 |
99.13 % |
97492553835 |
99.07 % |
| Passed |
796703744 |
75.81 % |
72987429635 |
74.17 % |
| NotPassed |
245051242 |
23.32 % |
24505124200 |
24.90 % |
| |
|
|
|
|
| LowMAPQ |
177757378 |
16.91 % |
17775737800 |
18.06 % |
| MateUnmapped |
9171563 |
0.87 % |
917156300 |
0.93 % |
| Duplicate |
40963691 |
3.90 % |
4096369100 |
4.16 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
21432 |
0.00 % |
2143200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
26308741 |
2.50 % |
2630874100 |
2.67 % |
| Unmapped |
9171563 |
0.87 % |
917156300 |
0.93 % |
Base Level Counts
| Bases |
# |
% |
| Total |
79646922800 |
100% |
| Passed |
68036059121 |
85.42 % |
| Trimmed |
3635069667 |
4.56 % |
| Clipped |
168782070 |
0.21 % |
| Overlapping |
6490711095 |
8.15 % |
| LowQuality |
1316300847 |
1.65 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |