/EXTERNAL DEEP/methylation/K006119_K006120_K006121_3_lane_gembs
BACK
SAMPLE K006119_K006120_K006121_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26543117 |
20060027 |
75.58 % |
| NonRefCpG |
303705 |
171413 |
56.44 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5330649 |
10.36 % |
2245127 |
5.25 % |
81818 |
14.68 % |
21003 |
5.39 % |
| Intermediate (0.3-0.7) |
8484196 |
16.49 % |
6029140 |
14.10 % |
109027 |
19.57 % |
58388 |
15.00 % |
| Methylated (0.7-1) |
37622091 |
73.14 % |
34487260 |
80.65 % |
366317 |
65.75 % |
309964 |
79.61 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.860 |
|
0.880 |
|
0.820 |
|
0.880 |
|