/EXTERNAL CREST/K006451_1_lane_gembs/JKU015.Bisulfite-Seq.DNA_Methylation.JGAX00000011820.JKU015_WGBS

BACK

SAMPLE K006451_1_lane_gembs LANE JKU015.Bisulfite-Seq.DNA_Methylation.JGAX00000011820.JKU015_WGBS

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1875092806 100.00 % 937546403 100.00 % 937546403 100.00 %
General Reads 1761812814 93.96 % 900461496 96.04 % 861351318 91.87 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 33243609 1.77 % 16470198 1.76 % 16773411 1.79 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 80036383 4.27 % 20614709 2.20 % 59421674 6.34 %
Bisulfite_reads C2T 916749772 48.89 % 468448285 49.97 % 448301487 47.82 %
Bisulfite_reads G2A 878306651 46.84 % 448483409 47.84 % 429823242 45.85 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 427995319
Average Unique 45.65 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 69362646273 36.27 % 43845663751 45.85 % 25516982522 26.68 %
Base Counts Overall C 26519712734 13.87 % 22806250861 23.85 % 3713461873 3.88 %
Base Counts Overall G 26452283054 13.83 % 2171995734 2.27 % 24280287320 25.39 %
Base Counts Overall T 66970347401 35.02 % 25854417929 27.04 % 41115929472 42.99 %
Base Counts Overall N 1954476750 1.02 % 951404831 0.99 % 1003071919 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9867543277815463
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 568064509



Mapping Quality

Mapping Quality Histogram
JKU015.Bisulfite-Seq.DNA_Methylation.JGAX00000011820.JKU015_WGBS.mapq.png



Read Length

Read Length Reads
101 937546403
101 937546403



Insert Size Plot

Insert Size Histogram
JKU015.Bisulfite-Seq.DNA_Methylation.JGAX00000011820.JKU015_WGBS.isize.png