/EXTERNAL CREST/mapping_coverage/K006451_1_lane_gembs
BACK
SAMPLE K006451_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1669634503 |
100% |
156206592665 |
100% |
| Mapped |
1609747038 |
96.41 % |
150157958700 |
96.13 % |
| Passed |
661443061 |
39.62 % |
54379257023 |
34.81 % |
| NotPassed |
948303977 |
56.80 % |
95778701677 |
61.32 % |
| |
|
|
|
|
| LowMAPQ |
479907276 |
28.74 % |
48470634876 |
31.03 % |
| MateUnmapped |
59887465 |
3.59 % |
6048633965 |
3.87 % |
| Duplicate |
93146170 |
5.58 % |
9407763170 |
6.02 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
258120 |
0.02 % |
26070120 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
374992411 |
22.46 % |
37874233511 |
24.25 % |
| Unmapped |
59887465 |
3.59 % |
6048633965 |
3.87 % |
Base Level Counts
| Bases |
# |
% |
| Total |
66744623961 |
100% |
| Passed |
51082940018 |
76.53 % |
| Trimmed |
2697394070 |
4.04 % |
| Clipped |
1562197867 |
2.34 % |
| Overlapping |
10803169071 |
16.19 % |
| LowQuality |
598922935 |
0.90 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |