/EXTERNAL CREST/methylation/K006451_1_lane_gembs

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SAMPLE K006451_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25746298 13718135 53.28 %
NonRefCpG 523061 82663 15.80 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006451_1_lane_gembs_coverage_refCpG.png ./IMG//K006451_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006451_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006451_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006451_1_lane_gembs_quality_refcpg.png ./IMG//K006451_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006451_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 14620810 29.93 % 9283432 27.79 % 398264 43.74 % 85196 28.50 %
Intermediate (0.3-0.7) 17382577 35.58 % 10840394 32.45 % 303803 33.37 % 106070 35.48 %
Methylated (0.7-1) 16846187 34.49 % 13286270 39.77 % 208394 22.89 % 107671 36.02 %
Median Methylation 0.530 0.590 0.370 0.550