/EXTERNAL CREST/K006445_1_lane_gembs/JKU007.Bisulfite-Seq.DNA_Methylation.JGAX00000011766.JKU007_WGBS

BACK

SAMPLE K006445_1_lane_gembs LANE JKU007.Bisulfite-Seq.DNA_Methylation.JGAX00000011766.JKU007_WGBS

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1933238764 100.00 % 966619382 100.00 % 966619382 100.00 %
General Reads 1807035662 93.47 % 926159455 95.81 % 880876207 91.13 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 15378264 0.80 % 7616225 0.79 % 7762039 0.80 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 110824838 5.73 % 32843702 3.40 % 77981136 8.07 %
Bisulfite_reads C2T 931578290 48.19 % 477409809 49.39 % 454168481 46.99 %
Bisulfite_reads G2A 890835636 46.08 % 456365871 47.21 % 434469765 44.95 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 409094331
Average Unique 42.32 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 71126977619 36.07 % 44756197973 45.39 % 26370779646 26.75 %
Base Counts Overall C 27252121062 13.82 % 23690442624 24.03 % 3561678438 3.61 %
Base Counts Overall G 27754677335 14.08 % 2099127595 2.13 % 25655549740 26.02 %
Base Counts Overall T 69104838939 35.04 % 27073212987 27.46 % 42031625952 42.63 %
Base Counts Overall N 1951738973 0.99 % 976195785 0.99 % 975543188 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9865641803223366
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 541807559



Mapping Quality

Mapping Quality Histogram
JKU007.Bisulfite-Seq.DNA_Methylation.JGAX00000011766.JKU007_WGBS.mapq.png



Read Length

Read Length Reads
101 966619382
101 966619382



Insert Size Plot

Insert Size Histogram
JKU007.Bisulfite-Seq.DNA_Methylation.JGAX00000011766.JKU007_WGBS.isize.png