/EXTERNAL CREST/mapping_coverage/K006445_1_lane_gembs
BACK
SAMPLE K006445_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1725894791 |
100% |
160618565699 |
100% |
| Mapped |
1654960542 |
95.89 % |
153454206550 |
95.54 % |
| Passed |
656558099 |
38.04 % |
52615559807 |
32.76 % |
| NotPassed |
998402443 |
57.85 % |
100838646743 |
62.78 % |
| |
|
|
|
|
| LowMAPQ |
521119542 |
30.19 % |
52633073742 |
32.77 % |
| MateUnmapped |
70934249 |
4.11 % |
7164359149 |
4.46 % |
| Duplicate |
82858014 |
4.80 % |
8368659414 |
5.21 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
278246 |
0.02 % |
28102846 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
394146641 |
22.84 % |
39808810741 |
24.78 % |
| Unmapped |
70934249 |
4.11 % |
7164359149 |
4.46 % |
Base Level Counts
| Bases |
# |
% |
| Total |
66246052005 |
100% |
| Passed |
49257555070 |
74.36 % |
| Trimmed |
2643124961 |
3.99 % |
| Clipped |
1639542595 |
2.47 % |
| Overlapping |
11990949603 |
18.10 % |
| LowQuality |
714879776 |
1.08 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |