/EXTERNAL CREST/methylation/K006445_1_lane_gembs

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SAMPLE K006445_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25650581 13139641 51.23 %
NonRefCpG 503530 61859 12.29 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006445_1_lane_gembs_coverage_refCpG.png ./IMG//K006445_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006445_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006445_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006445_1_lane_gembs_quality_refcpg.png ./IMG//K006445_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006445_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 13470379 27.81 % 7993916 24.60 % 401977 45.93 % 75530 28.92 %
Intermediate (0.3-0.7) 16370814 33.80 % 9834428 30.27 % 279718 31.96 % 89158 34.14 %
Methylated (0.7-1) 18596399 38.39 % 14665738 45.13 % 193568 22.12 % 96492 36.94 %
Median Methylation 0.570 0.650 0.350 0.550