/EXTERNAL CREST/K006442_1_lane_gembs/JKU004.Bisulfite-Seq.DNA_Methylation.JGAX00000011739.JKU004_WGBS
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1826385876 | 100.00 % | 913192938 | 100.00 % | 913192938 | 100.00 % |
| General Reads | 1732757349 | 94.87 % | 880704345 | 96.44 % | 852053004 | 93.30 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 20600937 | 1.13 % | 9996638 | 1.09 % | 10604299 | 1.16 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 73027590 | 4.00 % | 22491955 | 2.46 % | 50535635 | 5.53 % |
| Bisulfite_reads C2T | 895160618 | 49.01 % | 454835893 | 49.81 % | 440324725 | 48.22 % |
| Bisulfite_reads G2A | 858197668 | 46.99 % | 435865090 | 47.73 % | 422332578 | 46.25 % |
| Concept | Value |
|---|---|
| Unique Fragments | 430087008 |
| Average Unique | 47.10 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 67801888955 | 36.40 % | 43171872586 | 46.35 % | 24630016369 | 26.44 % |
| Base Counts Overall C | 25134704571 | 13.49 % | 21683632477 | 23.28 % | 3451072094 | 3.71 % |
| Base Counts Overall G | 25171932969 | 13.51 % | 2202648313 | 2.36 % | 22969284656 | 24.66 % |
| Base Counts Overall T | 66348257753 | 35.62 % | 25168242133 | 27.02 % | 41180015620 | 44.21 % |
| Base Counts Overall N | 1834575104 | 0.98 % | 919284167 | 0.99 % | 915290937 | 0.98 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9867103452781332 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 563262592 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 101 | 913192938 |
| 101 | 913192938 |
| Insert Size Histogram |
|---|
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