/EXTERNAL CREST/K006442_1_lane_gembs

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SAMPLE K006442_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1826385876 100.00 % 913192938 100.00 % 913192938 100.00 %
General Reads 1732757349 94.87 % 880704345 96.44 % 852053004 93.30 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 20600937 1.13 % 9996638 1.09 % 10604299 1.16 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 73027590 4.00 % 22491955 2.46 % 50535635 5.53 %
Bisulfite_reads C2T 895160618 49.01 % 454835893 49.81 % 440324725 48.22 %
Bisulfite_reads G2A 858197668 46.99 % 435865090 47.73 % 422332578 46.25 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 430087008
Average Unique 47.10 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 67801888955 36.40 % 43171872586 46.35 % 24630016369 26.44 %
Base Counts Overall C 25134704571 13.49 % 21683632477 23.28 % 3451072094 3.71 %
Base Counts Overall G 25171932969 13.51 % 2202648313 2.36 % 22969284656 24.66 %
Base Counts Overall T 66348257753 35.62 % 25168242133 27.02 % 41180015620 44.21 %
Base Counts Overall N 1834575104 0.98 % 919284167 0.99 % 915290937 0.98 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9867103452781332
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 563262592



Mapping Quality

Mapping Quality Histogram
K006442_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006442_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
JKU004.Bisulfite-Seq.DNA_Methylation.JGAX00000011739.JKU004_WGBS