{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 158759758, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 152234224, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.89, 
            "paired": 158759758, 
            "paired_qc_failed": 0, 
            "read1": 79379879, 
            "read1_qc_failed": 0, 
            "read2": 79379879, 
            "read2_qc_failed": 0, 
            "paired_properly": 148136315, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 93.31, 
            "with_itself": 150656133, 
            "with_itself_qc_failed": 0, 
            "singletons": 1578091, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.99, 
            "diff_chroms": 575763, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 175026970, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 171819448, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.17, 
            "paired": 175026970, 
            "paired_qc_failed": 0, 
            "read1": 87513485, 
            "read1_qc_failed": 0, 
            "read2": 87513485, 
            "read2_qc_failed": 0, 
            "paired_properly": 168294620, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.15, 
            "with_itself": 170965028, 
            "with_itself_qc_failed": 0, 
            "singletons": 854420, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.49, 
            "diff_chroms": 1256632, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 54862035, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1214444, 
            "paired_opt_dupes": 14763, 
            "dupes_pct": 0.022136
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 74970360, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1349605, 
            "paired_opt_dupes": 20203, 
            "dupes_pct": 0.018002
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 54859827, 
            "distinct_read_pairs": 53645429, 
            "one_read_pair": 52472543, 
            "two_read_pair": 1146516, 
            "NRF": 0.977864, 
            "PBC1": 0.978136, 
            "PBC2": 45.766952
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 74828889, 
            "distinct_read_pairs": 73485563, 
            "one_read_pair": 72156748, 
            "two_read_pair": 1315961, 
            "NRF": 0.982048, 
            "PBC1": 0.981917, 
            "PBC2": 54.831981
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 107295182, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 107295182, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 107295182, 
            "paired_qc_failed": 0, 
            "read1": 53647591, 
            "read1_qc_failed": 0, 
            "read2": 53647591, 
            "read2_qc_failed": 0, 
            "paired_properly": 107295182, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 107295182, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 147241510, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 147241510, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 147241510, 
            "paired_qc_failed": 0, 
            "read1": 73620755, 
            "read1_qc_failed": 0, 
            "read2": 73620755, 
            "read2_qc_failed": 0, 
            "paired_properly": 147241510, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 147241510, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 206516, 
        "Np": 0, 
        "N_opt": 206516, 
        "N_consv": 206516, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 120, 
            "corr_est_frag_len": 0.210154172046614, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2514028, 
            "argmin_corr": 1500, 
            "min_corr": 0.2009314, 
            "NSC": 1.0459, 
            "RSC": 0.1827331
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.535465743037
        }, 
        "rep1-pr1": {
            "FRiP": 0.42881155021
        }, 
        "rep1-pr2": {
            "FRiP": 0.428929525923
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.424019369852
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.177626783997, 
            "auc": 0.496064208769, 
            "ch_div": 0.165151242528, 
            "elbow_pt": 0.0, 
            "jsd": 0.688500369859, 
            "syn_auc": 0.498371948827, 
            "syn_elbow_pt": 0.322672946118, 
            "syn_jsd": 0.440363196956
        }
    ]
}
