/EXTERNAL CREST/mapping_coverage/K006466_K006467_2_lane_gembs
BACK
SAMPLE K006466_K006467_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1924909056 |
100% |
167426119187 |
100% |
| Mapped |
1864192746 |
96.85 % |
161293771877 |
96.34 % |
| Passed |
840093212 |
43.64 % |
64541279710 |
38.55 % |
| NotPassed |
1024099534 |
53.20 % |
96752492167 |
57.79 % |
| |
|
|
|
|
| LowMAPQ |
456948856 |
23.74 % |
46151834456 |
27.57 % |
| MateUnmapped |
60716310 |
3.15 % |
6132347310 |
3.66 % |
| Duplicate |
129045852 |
6.70 % |
6352070285 |
3.79 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
184584 |
0.01 % |
18642984 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
437920242 |
22.75 % |
44229944442 |
26.42 % |
| Unmapped |
60716310 |
3.15 % |
6132347310 |
3.66 % |
Base Level Counts
| Bases |
# |
% |
| Total |
68898803269 |
100% |
| Passed |
54227905166 |
78.71 % |
| Trimmed |
2803156370 |
4.07 % |
| Clipped |
2080356668 |
3.02 % |
| Overlapping |
8904062350 |
12.92 % |
| LowQuality |
883322715 |
1.28 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |