/EXTERNAL CREST/mapping_coverage/K006449_1_lane_gembs
BACK
SAMPLE K006449_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2324528915 |
100% |
172240090443 |
100% |
| Mapped |
2324528915 |
100.00 % |
172240090443 |
100.00 % |
| Passed |
1327396608 |
57.10 % |
130752177016 |
75.91 % |
| NotPassed |
997132307 |
42.90 % |
41487913427 |
24.09 % |
| |
|
|
|
|
| LowMAPQ |
391360627 |
16.84 % |
41487913427 |
24.09 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
605771680 |
26.06 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
70914734823 |
100% |
| Passed |
63807759145 |
89.98 % |
| Trimmed |
2913760815 |
4.11 % |
| Clipped |
3005630772 |
4.24 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
1187584091 |
1.67 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |