/EXTERNAL CREST/methylation/K006449_1_lane_gembs

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SAMPLE K006449_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25972012 18302369 70.47 %
NonRefCpG 327449 115097 35.15 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006449_1_lane_gembs_coverage_refCpG.png ./IMG//K006449_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006449_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006449_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006449_1_lane_gembs_quality_refcpg.png ./IMG//K006449_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006449_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9667171 19.02 % 7363476 18.03 % 172503 28.92 % 52624 16.42 %
Intermediate (0.3-0.7) 14985696 29.49 % 11097630 27.18 % 186271 31.23 % 98179 30.63 %
Methylated (0.7-1) 26168887 51.49 % 22368766 54.79 % 237669 39.85 % 169679 52.94 %
Median Methylation 0.710 0.730 0.590 0.720