/EXTERNAL CREST/K006441_1_lane_gembs

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SAMPLE K006441_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1918276290 100.00 % 959138145 100.00 % 959138145 100.00 %
General Reads 1805983844 94.15 % 925637868 96.51 % 880345976 91.79 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 502998 0.03 % 240028 0.03 % 262970 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 111789448 5.83 % 33260249 3.47 % 78529199 8.19 %
Bisulfite_reads C2T 918954109 47.91 % 471260614 49.13 % 447693495 46.68 %
Bisulfite_reads G2A 887532733 46.27 % 454617282 47.40 % 432915451 45.14 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 381185314
Average Unique 39.74 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 70597960372 36.08 % 44561468383 45.55 % 26036491989 26.61 %
Base Counts Overall C 26878786746 13.74 % 23588784111 24.11 % 3290002635 3.36 %
Base Counts Overall G 27398351325 14.00 % 1850689096 1.89 % 25547662229 26.11 %
Base Counts Overall T 68857925420 35.19 % 26862896569 27.46 % 41995028851 42.93 %
Base Counts Overall N 1931157717 0.99 % 968252631 0.99 % 962905086 0.98 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9695703807168587
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 519346475



Mapping Quality

Mapping Quality Histogram
K006441_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006441_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
JKU003.Bisulfite-Seq.DNA_Methylation.JGAX00000011730.JKU003_WGBS