/EXTERNAL CREST/methylation/K006441_1_lane_gembs

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SAMPLE K006441_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25601170 12409360 48.47 %
NonRefCpG 526872 74682 14.17 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006441_1_lane_gembs_coverage_refCpG.png ./IMG//K006441_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006441_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006441_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006441_1_lane_gembs_quality_refcpg.png ./IMG//K006441_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006441_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 14571376 30.16 % 8408917 26.81 % 416398 45.16 % 84828 29.14 %
Intermediate (0.3-0.7) 16501051 34.16 % 9623870 30.68 % 299096 32.44 % 99498 34.19 %
Methylated (0.7-1) 17236071 35.68 % 13335350 42.51 % 206464 22.39 % 106731 36.67 %
Median Methylation 0.540 0.620 0.360 0.550